Monday, February 13, 2012

[beasiswa] [info] Bioinformatics analysis of complex DNA-sequencing data to assess microbial diversity in geological radioactive waste disposal environments (PhD)

 

Bioinformatics analysis of complex DNA-sequencing data to assess microbial diversity in geological radioactive waste disposal environments (PhD)

Introduction

Recent developments in new high-throughput technologies have revolutionized molecular biology. This technological progress has led to an explosive growth of the biological information (e.g. via DNA sequencing, RNA microarrays, proteomics), creating new opportunities in the field of bioinformatics in order to computationally deal with the dramatic increase of data. More specifically, the recent availability of next-generation sequencing methods for DNA sequencing has opened up new horizons in microbial community analysis. Such 'metagenomics' applications allow the simultaneous high-throughput analysis of genetic material of most of the microbes present in a given sample, without the need for culturing the bacteria first. Over the last years, this approach has been used to reveal the complex microbial diversity in a wide range of previously unexplored environmental samples (e.g. oceans, human gut, etc.), and is certainly of interest for those environments containing microorganisms that are difficult to be cultured under laboratory conditions. Deep subsurface geological clay formations, which were selected and currently studied as candidate host rocks for geological radioactive waste disposal (HADES, Boom clay, Belgium; and Mont Terri, Opalinus clay Swiss), can definitely be classified under these type of environments.
However, these high-throughput sequencing methods produce a massive amount of data. For example, today, one run on the HiSeq2000 sequencing platform of Illumina produces gigabytes of DNA sequencing data Moreover, the domain of next-generation sequencing data analysis is still maturing, and even more powerful sequencing methods are being developed. Therefore, next to important challenges on the molecular biology side (e.g. good quantity and quality DNA extraction from environmental samples), any metagenomic project will require reliable and high performance bioinformatics methods to extract the useful biological information out of these data. However, as the suitability of existing bioinformatics algorithms for the analysis of this type of new large-scale community data remains unknown (Caporaso et al., 2011), benchmarking and eventually adapting existing open-source algorithms (Schloss et al., 2009; Caporaso et al., 2010; Zhou et al., 2011), will be needed.  

Objectives

The objective of this PhD research is the development of a bioinformatics pipeline able to determine the microbial diversity in environmental samples based on the next-generation DNA-sequencing technologies. 
As a proof of concept, the bioinformatics algorithms developed in this research proposal will be used to assess the presence of microbial activity in deep subsurface geological clay formations in the context of radioactive waste disposal (Boom and Opalinus clay). Preliminary results from our running projects (e.g. AWM PostDoc of Katinka Wouters at SCK•CEN, and Bitumen-Nitrate experiment in Mont Terri), indicate that complex microbial communities are present and active in the Boom and Opalinus clay, but that a significant fraction of these communities are 'novel' bacteria (not cultivated and not characterized or described yet), and their methods of survival in these clay layers and metabolic properties are unknown. Thus it is our interest to further explore these environments with cultivation-based and DNA-based technologies. First, a methodology focusing only the 16S rRNA genes, which are genetic markers for microbe identification and taxonomic classification, will be developed. Second, the complete gene pool of the full microbial community will be analyzed, to assess the metabolic potential of the microbial population in the clay layers. The bioinformatics analysis of the DNA-sequencing data obtained from these kind of environments are challenging and will require optimization and adaptation of algorithms. As these data sets cannot be processed anymore with conventional bioinformatics tools, the adaptation and potentially development of novel algorithms will be needed.

Required education level of potential candidates: master in engineering sciences, master in sciences
Candidates must have a background in: Biology, Informatic


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[beasiswa] [info] PhD student Statistical Methodology in Vaccine and Infectious Disease Research (2 mandates)

 

PhD student Statistical Methodology in Vaccine and Infectious Disease Research (2 mandates)

Background
www.ibiostat.be
Task description
PhD in statistical methodology in vaccine and infectious disease research. The research activities are part of an interuniversity collaboration between the Institute VAXINFECTIO of the University of Antwerp, and the Center for Statistics, Hasselt University. The main interdisciplinary research themes are i) to improve and/or increase the understanding of the immune system, ii) to develop strategies for the containment of antibiotic resistance and iii) to develop new methodology in modeling infectious disease spread.
Profile
  • You have a strong quantitative background
  • You are intrinsically motivated, think analytically and creatively, and work in an organised and focused manner
  • You enjoy working in an multidisciplinary environment (statistics, epidemiology, medical sciences, life sciences)
  • Experience in the use of statistical/mathematical software such as SAS, R, etc., is a plus
Diploma
Licentiate, Master, or equivalent degree in (bio)statistics, mathematics, physics, biology or related field. (or equivalent).
Employment
The appointment takes effect from October 1, 2012 for a period of 2 years, extendable to a total period of 4 years.
Further information
Content job responsibilities:
   Prof. dr. Niel HENS, +32-11-268232, niel.hens@uhasselt.be
   Prof. dr. Marc AERTS, +32-11-268247, marc.aerts@uhasselt.be
   Prof. dr. Geert MOLENBERGHS, +32-11-268238, geert.molenberghs@uhasselt.be
Content terms of employment and selection procedure:
   jobs@uhasselt.be, +32-11-268080
Application
Applicants must use the official application forms which can be downloaded herehttp://www.uhasselt.be/download/APengelsUH.doc.
Application by e-mail will only be taken into consideration when sent to the following address:jobs@uhasselt.be.
Please add a copy of your diploma, a list of courses and your results per course. Without these we cannot evaluate your application.
The completed application forms must reach the above mentioned address no later than 06 March 2012.
Selection procedure
Preselection on the basis of CV. Interview with the selected candidates.

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[beasiswa] [info] PhD student in Biostatistics in topics relevant to developing countries

 

PhD student in Biostatistics in topics relevant to developing countries

Background
www.ibiostat.be
Task description

  • You will carry out research and develop or investigate new and improved statistical methodology relevant for data and research topics of developing countries. 
  • Under the co-supervision of a partner in the South, you will take part in the South-North research collaboration and contribute to the local capacity building in the South. You will defend a PhD within a 6 years period. 
  • You will carry out applied research within the I-BioStat consultancy unit and transfer your experience, expertise, knowledge and skills to the South. 
Profile
  • Being highly motivated to take part in the South-North collaboration and to contribute to the local capacity building in the South;
  • Being experienced in the use of statistical software such as SAS, R, StatXact, etc.
  • Enjoying working in an multidisciplinary and multicultural environment
  • Having finished or are currently finishing the ICP Master of Biostatistics;
  • Being intrinsically motivated, thinking analytically and creatively, working in an organised and focused manner and on an individual/independent basis, under the joint supervision of a promoter in the South and a promoter in the North;
  • Possessing excellent knowledge of the English language and good scientific writing skills;
Diploma
Master of Biostatistics
Employment
The appointment takes effect as of 01/10/2012, for a period of 2 years, extendable to two more periods of 2 years, each time conditional on a positive evaluation.
Further information
Content job responsibilities:
   Prof. dr. Marc AERTS, +32-11-268247, marc.aerts@uhasselt.be
   Prof. dr. Paul JANSSEN, +32-11-268027, paul.janssen@uhasselt.be
   Prof. dr. Geert MOLENBERGHS, +32-11-268238, geert.molenberghs@uhasselt.be
   dr. Herbert THIJS, +32-11-268228, herbert.thijs@uhasselt.be
Content terms of employment and selection procedure:
   jobs@uhasselt.be, +32-11-268080
Application
Applicants must use the official application forms which can be downloaded herehttp://www.uhasselt.be/download/APengelsUH.doc.
Application by e-mail will only be taken into consideration when sent to the following address:jobs@uhasselt.be.
Please add a copy of your diploma, a list of courses and your results per course. Without these we cannot evaluate your application.
The completed application forms must reach the above mentioned address no later than 06 March 2012.
Selection procedure
Preselection on the basis of CV. Interview with the selected candidates.

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[vacancy] Software Engineer

 

PT Salam Rahmat Semesta (also known as Razaki Technology) is a fast growing IT company. Our products and solutions including  Contact Center Solution, Billing Systems, IP PBX, IPTV, Digital Signage, Interactive Kiosk and many other. Due to growing business development, we would like to invite talented people to join our technical and operational teams as:

Senior Software Engineer/ Software Engineer

Responsibilities for Senior Software Engineer:
-    Application development and customization
-    Lead a team of developers in assigned programming tasks
-    Project management
-    Carry out independent research to help find solutions to the development challenges
-    Handle the complete lifecycle of an application from the process of requirements gathering to deployment

Minimum qualifications:
-    Male/ Female, graduated from reputable university with a degree of Information Technology/Computer Science or equivalent
-    Good analytical thinking, excellent logical thinking and able to solve problems quickly
-    Willing to work under tight schedule and high pressure
-    Creative, innovative and able to work in dynamic working environment
-    Good knowledge in algorithm and software design concept
-    Excellent skill in any of programming languages such as C/C++, Java, PHP
-    Have strong knowledge in various DBMS (MySQL, Oracle, SQL Server, etc) and also SQL and RDBMS concept.
-    Have strong knowledge and experience in computer data communication and client/server programming
-    3-5 years experience as Developer/Programmer/Software Engineer (for Senior position)
-    Willingness to travel
-    Fresh graduate are welcome to apply for Junior positions

Additional qualifications:
-    Experience in using development versioning tool (CVS/SVN or Mercurial)
-    Experience in programming on Linux and Windows platform
-    Good knowledge in multimedia programming such as audio, video and graphic animation
-    Excellent in English (spoken & written)

Submit your CV and application letter to: hrd@razakitechnology.com

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[beasiswa] [BUTUH INFO] Postgraduate untuk ENERGY SYSTEMS

 

Dear all,
saya membutuhkan informasi jurusan postgraduate untuk ENERGY SYSTEMS ..yang ada di eropa atau amerika.
mungkin ada yang bisa sharing info university yang bagus?

sekian dan terima kasih.
 
Regards,

Muhammad Asrofi



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[beasiswa] [INFO] Msc Technology Governance 2012/2013 - Tallinn University of Technology, Estonia

 

Dear All,

Menginformasikan kesempatan beasiswa di Estonia - Tallinn sbb : http://tg.deca.ee/eng/the_students/scholarships/

selamat mencoba :)

Regards,
Dyan
TUT Estonia

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Re: [beasiswa] Re: [butuh info] - medical check up

 

mbak sally kalau akan medical cek up tidak perlu yang lengkap sesuai persyaratan beasiswa saja...
kalau saya itu waktu medical cek up untuk monbusho hanya rontgen, darah, air seni dan paru2 di prodia hanya 170rb...(thn 2010)
dan banyak juga klinik di kampus2 seperti di itb bumi medica ganesha lebih murah dari klinik swasta...


From: hadisoemartopanji <hadisoemartopanji@gmail.com>
To: beasiswa@yahoogroups.com
Sent: Monday, February 13, 2012 11:35 AM
Subject: [beasiswa] Re: [butuh info] - medical check up

 
Mbak Sally,

Kalau saya dulu cek up di RS Hasan Sadikin karena saya memang tinggal di Bandung. Di sana ada klinik khusus untuk "pemeriksaan pegawai" alias klinik medical check up. Mereka sudah berpengalaman dan menawarkan paket2 check up yang juga bisa di-costumized sesuai kebutuhan. Nggak mahal kok, jauh di bawah sejuta lah. Intinya sih, sebelum ke lab/RS swasta, coba dulu ke RS besar/rujukan milik pemerintah (bukan Puskesmas ya...). Rule of thumbs nya sih: di RS pemerintah lebih murah..

Salam,
Panji

--- In beasiswa@yahoogroups.com, "sally Azmi" <sally_riddle2@...> wrote:
>
> slm kenal teman2 milis..sy mau tny dong..sy mau nyoba ngajuin beasiswa di Luar negri dan slh stu prsyrtn doc ny hrus ngasih medical check up yg trbaru..dan kmrin tmn da yg bilang klo buat medicak check up itu bs smp 1-2 jt'an..bner ngk y?? ..kira2 tmn2 milis da yg tau ngk RS yg biaya medical check up murah..atau da saran lain gmn spy bs nge luarin biaya medical check up lebih ekonomis..hhee..thx before ya tmn
>



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[vacancy] Fw: Vacancy at Sari Pan Pacific [1 Attachment]

 
[Attachment(s) from Arzanela Arifin included below]

From: Chitra Riani <chitra.riani@panpacific.com>
To: "akka3011@gmail.com" <akka3011@gmail.com>; "ara3011@yahoo.com" <ara3011@yahoo.com>
Cc: Nunung Nurhasanah <hcd.cgk@panpacific.com>
Sent: Monday, February 6, 2012 11:39 AM
Subject: Vacancy


 
Best Regards,
Chitra Riani | Human Capital Executive
Pan Pacific | Sari Pan Pacific Jakarta | Hotel Offers    
Sari Pan Pacific Jakarta
Jl.MH Thamrin Kav.6 Jakarta 10340, Indonesia
D: +62 21 2993 2770 / T: +62 21 2993 2888 | F: +62 21 213154750 | E : chitra.riani@panpacific.com
 
Global Hotel Alliance (GHA) is the world´s largest alliance of independent hotel brands. GHA currently includes brands such as Anantara, Doyle Collection, First, Kempinski,  Leela, Marco Polo, Mirvac, Omni, Pan Pacific, PARKROYAL and Tivoli, encompassing over 260 upscale and luxury hotels with over 60,000 rooms in 47 different countries.
To book or for further information visit www.gha.com

This e-mail and any files transmitted with it are confidential and are intended solely for the use of the individual or entity to whom they are addressed. If you are not the intended recipient or the person responsible for delivering the e-mail to the intended recipient, please be advised that you have received this e-mail in error and that any use, dissemination, forwarding, printing or copying of this e-mail is strictly prohibited. If you have received this e-mail in error, please delete it immediately.
 
Please consider if you really need to print this email. Let's do our bit for the environment.
 





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Attachment(s) from Arzanela Arifin

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[vacancy] Fw: HHRMA BANDUNG OPL LIST FEBRUARY 2012 [1 Attachment]

 
[Attachment(s) from Arzanela Arifin included below]

From: "hr.development@bandung.santika.com" <hr.development@bandung.santika.com>
To: ara3011@yahoo.com; 'Arzanela K. Kuncoro' <arzanela@panpacific.com>
Sent: Saturday, February 4, 2012 12:04 PM
Subject: HHRMA OPL LIST FEBRUARY 2012

 
 
Best Regards,
 
Dewi Intan M I HR Development Manager
HOTEL SANTIKA BANDUNG
Phone. +6222 4203009 I Fax. +6222 4239601
HP. +62 818648727
Online booking. www.santika.com  I  www.amarishotel.com
 
 


__________ Information from ESET NOD32 Antivirus, version of virus signature database 6856 (20120203) __________

The message was checked by ESET NOD32 Antivirus.

http://www.eset.com





From: "hr.development@bandung.santika.com" <hr.development@bandung.santika.com>
To: ara3011@yahoo.com; 'Arzanela K. Kuncoro' <arzanela@panpacific.com>
Sent: Saturday, February 4, 2012 12:04 PM
Subject: HHRMA OPL LIST FEBRUARY 2012

Dear Bu Nela,
Please find attached OPL HHRMA Bandung. Kindly help us to distribute it to all of your relations.
 
 
Best Regards,
 
Dewi Intan M I HR Development Manager
HOTEL SANTIKA BANDUNG
Phone. +6222 4203009 I Fax. +6222 4239601
HP. +62 818648727
Online booking. www.santika.com  I  www.amarishotel.com
 
 


__________ Information from ESET NOD32 Antivirus, version of virus signature database 6856 (20120203) __________

The message was checked by ESET NOD32 Antivirus.

http://www.eset.com




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[beasiswa] [BUTUH INFO] Beasiswa StuNed 2012 - 2013

Dear All,

Akhir minggu lalu, saya baru terima admission letter dari ISS DenHaag untuk Program Master Development Studies.

Pertanyaan saya, apakah tahun ini StuNed masih membuka kesempatan untuk apply beasiswa? Karena NFP sudah lewat.

Mohon informasinya. Terima kasih.

FiGa


Sent from my BlackBerry® smartphone from Sinyal Bagus XL, Nyambung Teruuusss...!

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[beasiswa] [Butuh Info] Reserve List ViBot 2012

 

Dear Pejuang EM,
Perkenalkan nama Saya Alfiyan, lulus S1 Teknik Elektro akhir 2009. Setelah lebih 2 tahun ini bekerja profesional, Saya putuskan mencoba peruntungan dengan apply Master ViBot 2012. Setelah proses hampir 3 bulan lebih, minggu kemarin daftar pre-selection list sudah diumumkan melalui email. 

Untuk saat ini, saya harus puas hanya masuk reserve list di urutan 103 dari 111 reserve list. Adakah rekan2 di sini yang juga apply ViBot dan bagaimana statusnya? 

Atau ada rekan2 yang memiliki pengalaman menjadi reserve list? Bagaimana chance-nya? Saya sendiri saat ini jg cukup realistis dan hanya bisa berdoa untuk yang terbaik. Semoga tahun depan bisa mencoba lagi :)

Regards,
Alfiyan


=

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[lowongan-kerja-online] Fw: vacancy@lorinhotel & resort

 



From: Samsuri Sam <samsuribgs@yahoo.co.id>
To: "ara3011@yahoo.com" <ara3011@yahoo.com>
Sent: Wednesday, February 1, 2012 6:08 PM
Subject: vacancy@lorinhotel & resort


Terima kasih & best regards
Samsuri

[Non-text portions of this message have been removed]

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